Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs7005217 chr8:655562 T/G 9.88E-5 496 25.48 20.62 22.67 KM Plot
LGG rs7016493 chr8:464723 C/G 2.93E-5 502 23.53 20.3 13.8 KM Plot
LGG rs7034776 chr9:25718023 C/T 5.28E-7 509 24.85 16.47 19.18 KM Plot
LGG rs7047667 chr9:7209215 C/T 4.97E-5 509 21.3 19.95 23.52 KM Plot
LGG rs7067865 chr10:908387 C/T 3.22E-8 506 21.83 24.5 14.15 KM Plot
LGG rs7074642 chr10:878359 A/G 4.42E-7 509 21.7 24.5 14.43 KM Plot
LGG rs7077278 chr10:911291 A/G 1.99E-10 509 13.8 25.18 21.65 KM Plot
LGG rs7088956 chr10:908693 G/A 2.34E-7 506 21.7 26.03 14.15 KM Plot
LGG rs7092432 chr10:107902500 C/T 8.68E-5 501 21.6 28.68 13 KM Plot
LGG rs7101167 chr10:11815455 A/G 1.82E-8 509 13.2 22.73 24.08 KM Plot
LGG rs71152907 chr16:8712196 A/ATTTTGTT 2.27E-7 501 8.17 17.2 24.03 KM Plot
LGG rs71152909 chr16:8715196 T/TAAATAAAC 2.88E-9 509 8.17 18.8 24.03 KM Plot
LGG rs7121952 chr11:69025310 A/G 6.64E-5 509 21.87 24.03 20.17 KM Plot
LGG rs7127913 chr11:69023456 C/G 8.09E-5 508 22.23 23.63 20.17 KM Plot
LGG rs71297917 chr10:894506 T/TAA 4.16E-6 506 21.77 24.53 14.43 KM Plot